Team Logo. The Batavia Clippers were a team in the New York-Penn League. They were the Short-Season A affiliate of the Philadelphia Phillies. In 1998 they changed their name to the Batavia Muckdogs. Retrieved from "https://prosportsteams.fandom.com/wiki/Batavia_Clippers?oldid=10508" Categories: Former NYPL Teams Teams in New York Add category Cancel Save Community content is available under CC-BY-SA unless otherwise noted.