Team Logo. The Batavia Trojans were a team in the New York-Penn League. They were the Short-Season A affiliate of the Cleveland Indians. In 1988 they changed their name to the Batavia Clippers. Retrieved from "https://prosportsteams.fandom.com/wiki/Batavia_Trojans?oldid=10541" Categories: Former NYPL Teams Teams in New York Add category Cancel Save Community content is available under CC-BY-SA unless otherwise noted.